Fixing DAN timing, inverting MHVPS_FLT dig input

EC-GN-JA-PCF-IN/src/main/c++/GAMs/JAConditionalSignalUpdateGAM/JAConditionalSignalUpdateGAM.cpp

@@ -292,12 +292,12 @@ bool JAConditionalSignalUpdateGAM::Execute() {
     if (state) {
       needsReset = true;
       MARTe::uint32 i;
-      for (i = 0u; i < numberOfOutputSignals; ++i) {
+      for (i = 0u; i < numberOfOutputSignals; i++) {
         *outputSignals[i] = outputs[i].value;
       }
     } else {
       MARTe::uint32 i;
-      for (i = 0u; i < numberOfOutputSignals; ++i) {
+      for (i = 0u; i < numberOfOutputSignals; i++) {
         *outputSignals[i] = outputs[i].defaultValue;
       }
     }

EC-GN-JA-PCF-IN/src/main/resources/qst-gyrotron-fast-controller/Configurations/src/app_states.marte

@@ -53,7 +53,7 @@
     +DANThread = {
       Class = RealTimeThread
       CPUs = @cpus_dan
-      Functions = { CurrentTimeDIO, DANDIOPublisherGAM }
+      Functions = { WaitForDioSignals, DANDIOPublisherGAM }
     }
     +ReferenceGenerationThread = {
       Class = RealTimeThread
@@ -118,7 +118,7 @@
     }
     +DANThread = {
       Class = RealTimeThread
-      Functions = { CurrentTimeDIO, DANDIOPublisherGAM }
+      Functions = { WaitForDioSignals, DANDIOPublisherGAM }
       CPUs = @cpus_dan
     }
     +ReferenceGenerationThread = {
@@ -187,7 +187,7 @@
     }
     +DANThread = {
       Class = RealTimeThread
-      Functions = { CurrentTimeDIO, DANDIOPublisherGAM }
+      Functions = { WaitForDioSignals, DANDIOPublisherGAM }
       CPUs = @cpus_dan
     }
     +ReferenceGenerationThread = {
@@ -259,7 +259,7 @@
     }
     +DANThread = {
       Class = RealTimeThread
-      Functions = { CurrentTimeDIO, DANDIOPublisherGAM }
+      Functions = { WaitForDioSignals, DANDIOPublisherGAM }
       CPUs = @cpus_dan
     }
     +ReferenceGenerationThread = {
@@ -326,7 +326,7 @@
     }
     +DANThread = {
       Class = RealTimeThread
-      Functions = { CurrentTimeDIO, DANDIOPublisherGAM }
+      Functions = { WaitForDioSignals, DANDIOPublisherGAM }
       CPUs = @cpus_dan
     }
     +ReferenceGenerationThread = {
@@ -396,7 +396,7 @@
     }
     +DANThread = {
       Class = RealTimeThread
-      Functions = { CurrentTimeDIO, DANDIOPublisherGAM }
+      Functions = { WaitForDioSignals, DANDIOPublisherGAM }
       CPUs = @cpus_dan
     }
     +ReferenceGenerationThread = {
@@ -458,7 +458,7 @@
     }
     +DANThread = {
       Class = RealTimeThread
-      Functions = { CurrentTimeDIO, DANDIOPublisherGAM }
+      Functions = { WaitForDioSignals, DANDIOPublisherGAM }
       CPUs = @cpus_dan
     }
     +ReferenceGenerationThread = {
@@ -523,7 +523,7 @@
     }
     +DANThread = {
       Class = RealTimeThread
-      Functions = { CurrentTimeDIO, DANDIOPublisherGAM }
+      Functions = { WaitForDioSignals, DANDIOPublisherGAM }
       CPUs = @cpus_dan
     }
     +ReferenceGenerationThread = {
@@ -589,7 +589,7 @@
     }
     +DANThread = {
       Class = RealTimeThread
-      Functions = { CurrentTimeDIO, DANDIOPublisherGAM }
+      Functions = { WaitForDioSignals, DANDIOPublisherGAM }
       CPUs = @cpus_dan
     }
     +ReferenceGenerationThread = {

EC-GN-JA-PCF-IN/src/main/resources/qst-gyrotron-fast-controller/Configurations/src/data/pxi.marte

@@ -539,6 +539,26 @@
     }
   }
 }
+
+
+//# PXI NI6528 Digital input datasource
+//# TODO: configure it
++NI6528_1_DIO = {
+  Class = NI6528
+  DeviceName = "/dev/pxi6528"
+  BoardId = 0 // TODO: check if not 1
+  Signals = {
+    //# P5.6 O.22 PXI_FLT 
+    DO5 = {
+      Type = uint8
+      PortId = 5
+      InversionMask = 0xFF
+    }
+  }
+}
+
+
+
 //# Direct HW accesses. Follwing device/port assignment must be consistent with actual wiring.
 //# NI6259.0
 //# APS_SWON BoardId=0, PortId=3.0

EC-GN-JA-PCF-IN/src/main/resources/qst-gyrotron-fast-controller/Configurations/src/thread1/state_management.marte

@@ -147,7 +147,7 @@
     +Event = {
       Class = Message
       Destination = StateMachine
-      Function = GoError
+      Function = GoWaitStandby
     }
   }
   //# Go to wait standby

EC-GN-JA-PCF-IN/src/main/resources/qst-gyrotron-fast-controller/Configurations/src/thread3/datasync.marte

@@ -6,6 +6,9 @@
     Class = RealTimeThreadSynchronisation
     Timeout = 100
     Signals = {
+      DiTime = {
+        Type = uint32
+      }    
       PXI6259_Status = {
         Type = uint32
       }
@@ -146,6 +149,9 @@
   +SyncThreadProducerGAM = {
     Class = IOGAM
     InputSignals = {
+      Time = {
+        DataSource = DDB3
+      }        
       PXI6259_Status = {
         Alias = Status
         DataSource = NI6259_DIO_P0
@@ -251,6 +257,9 @@
       }
     }
     OutputSignals = {
+      DiTime = {
+        DataSource = SynchThread
+      }     
       PXI6259_Status = {
         DataSource = SynchThread
       }

EC-GN-JA-PCF-IN/src/main/resources/qst-gyrotron-fast-controller/Configurations/src/thread3/pxi_io_gams.marte

@@ -162,11 +162,26 @@
     CCPS_IN_OPERATION = {
       DataSource = DDB3
     }
+    //! implicit: Placeholder for spare output
+    NONE_DO23 = {
+      DataSource = DDB3
+      Type = uint8
+      NumberOfElements = 2
+      NumberOfDimensions = 1
+      Default = { 0, 0 }
+    }
+    NONE_DO5_1_Before = {
+      DataSource = DDB3
+      Type = uint8
+      NumberOfElements = 6
+      NumberOfDimensions = 1
+      Default = { 0, 0, 0, 0, 0, 0 }
+    }
     PXI_FLT = {
       DataSource = DDB3
     }    
     //! implicit: Placeholder for spare output
-    NONE_DO23 = {
+    NONE_DO5_1_After = {
       DataSource = DDB3
       Type = uint8
       Default = 0
@@ -182,6 +197,11 @@
     DO5 = {
       DataSource = NI6528_0_DIO
     }
+    DO5_B1 = {
+      Alias = DO5
+      DataSource = NI6528_1_DIO
+      Trigger = 1
+    }
   }
 }
 // //# INPUTs: StateMahine Value, NI6528P3Value and NI6528P4Value

EC-GN-JA-PCF-IN/src/main/resources/qst-gyrotron-fast-controller/Configurations/src/thread4/adc_2_dan.marte

@@ -130,7 +130,7 @@
   }
   +FastAnalogDAN = {
     Class = "DAN::DANSource"
-    NumberOfBuffers = 10000
+    NumberOfBuffers = 100
     CPUMask = @cpus_fdan
     StackSize = 10000000
     DanBufferMultiplier = 10000 //10s at 1kHz loop (1M with 1k samples)

EC-GN-JA-PCF-IN/src/main/resources/qst-gyrotron-fast-controller/Configurations/src/thread5/dio_dan_writer.marte

@@ -6,14 +6,161 @@
     Class = GAMDataSource
     AllowNoProducers = 1
     Signals = {
-      CurrTime = {
+      DiTime = {
-        Type = uint64
+        Type = uint32
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }    
+      PXI6528_Status = {
+        Type = uint32
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      GYA_APS_READY = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      GYA_APS_FLT = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      GYA_BPS_READY = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      GYA_BPS_FLT = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      MHVPS_OV = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      MHVPS_OC = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      MHVPS_FLT = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      MHVPS_READY = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      ECPC_MOD = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      FAST_TRIP = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      CRIO_RV1 = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      CRIO_RV2 = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      CRIO_RV3 = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      PLC_ITL = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      PLC_STANDBY = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      PLC_READY = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      PLC_ON = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      PLC_PERMIT = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      PLC_OP_SELECTED = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      PLC_CC_OP_SELECTED = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      PLC_SYNCMODE = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      TRIGGER = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      BEAM_ON_STAT = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      HVARMED = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      HVINJECTION = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      RFON = {
+        Type = uint8
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      BEAM_ON_TIME = {
+        Type = uint32
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
+      }
+      RFON_TIME = {
+        Type = uint32
+        NumberOfElements = @dan_ratio
+        NumberOfDimensions = 1
       }
     }
   }
   +DANDIODataSource = {
     Class = "DAN::DANSource"
-    NumberOfBuffers = 1000
+    NumberOfBuffers = 100
     CPUMask = @cpus_dio
     StackSize = 10000000
     DanBufferMultiplier = 200 //10s at 20Hz
@@ -23,10 +170,9 @@
     NumberOfPostTriggers = 0
     Signals = {
       DI_Time = {
-        Type = uint64
+        Type = uint32
         TimeSignal = 1
-        AbsoluteTime = 1
+        AbsoluteTime = 0
-        TimeSignalMultiplier = 1e-9
       }
       PXI6528_Status = {
         SamplingFrequency = @fast_clock
@@ -207,26 +353,17 @@
 }
 
 +Functions = {
-  +CurrentTimeDIO = {
+  +WaitForDioSignals = {
-    Class = "IOExt::SystemClockGAM"
-    OutputSignals = {
-      CurrTime = {
-        DataSource = DDB5
-        Type = uint64
-      }
-    }
-  }
-  +DANDIOPublisherGAM = {
     Class = IOGAM
     InputSignals = {
-      Time = {
+      DiTime = {
-        DataSource = DDB5
+        DataSource = SynchThread
-        Alias = CurrTime
+        Samples = @dan_ratio
+        Frequency = 1
       }
       PXI6528_Status = {
         DataSource = SynchThread
         Samples = @dan_ratio
-        Frequency = 1
       }
       GYA_APS_READY = {
         DataSource = SynchThread
@@ -341,6 +478,195 @@
         Samples = @dan_ratio
       }
     }
+    OutputSignals = {
+      DiTime = {
+        DataSource = DDB5
+      }
+      PXI6528_Status = {
+        DataSource = DDB5
+      }
+      GYA_APS_READY = {
+        DataSource = DDB5
+      }
+      GYA_APS_FLT = {
+        DataSource = DDB5
+      }
+      GYA_BPS_READY = {
+        DataSource = DDB5
+      }
+      GYA_BPS_FLT = {
+        DataSource = DDB5
+      }
+      MHVPS_OV = {
+        DataSource = DDB5
+      }
+      MHVPS_OC = {
+        DataSource = DDB5
+      }
+      MHVPS_FLT = {
+        DataSource = DDB5
+      }
+      MHVPS_READY = {
+        DataSource = DDB5
+      }
+      ECPC_MOD = {
+        DataSource = DDB5
+      }
+      FAST_TRIP = {
+        DataSource = DDB5
+      }
+      CRIO_RV1 = {
+        DataSource = DDB5
+      }
+      CRIO_RV2 = {
+        DataSource = DDB5
+      }
+      CRIO_RV3 = {
+        DataSource = DDB5
+      }
+      PLC_ITL = {
+        DataSource = DDB5
+      }
+      PLC_STANDBY = {
+        DataSource = DDB5
+      }
+      PLC_READY = {
+        DataSource = DDB5
+      }
+      PLC_ON = {
+        DataSource = DDB5
+      }
+      PLC_PERMIT = {
+        DataSource = DDB5
+      }
+      PLC_OP_SELECTED = {
+        DataSource = DDB5
+      }
+      PLC_CC_OP_SELECTED = {
+        DataSource = DDB5
+      }
+      PLC_SYNCMODE = {
+        DataSource = DDB5
+      }
+      TRIGGER = {
+        DataSource = DDB5
+      }
+      BEAM_ON_STAT = {
+        DataSource = DDB5
+      }
+      HVARMED = {
+        DataSource = DDB5
+      }
+      HVINJECTION = {
+        DataSource = DDB5
+      }
+      RFON = {
+        DataSource = DDB5
+      }
+      BEAM_ON_TIME = {
+        DataSource = DDB5
+      }
+      RFON_TIME = {
+        DataSource = DDB5
+      }
+    }
+  }
+
+  +DANDIOPublisherGAM = {
+    Class = IOGAM
+    InputSignals = {
+      DiTime = {
+        DataSource = DDB5
+        Ranges = {{0, 0}}
+      }
+      PXI6528_Status = {
+        DataSource = DDB5
+      }
+      GYA_APS_READY = {
+        DataSource = DDB5
+      }
+      GYA_APS_FLT = {
+        DataSource = DDB5
+      }
+      GYA_BPS_READY = {
+        DataSource = DDB5
+      }
+      GYA_BPS_FLT = {
+        DataSource = DDB5
+      }
+      MHVPS_OV = {
+        DataSource = DDB5
+      }
+      MHVPS_OC = {
+        DataSource = DDB5
+      }
+      MHVPS_FLT = {
+        DataSource = DDB5
+      }
+      MHVPS_READY = {
+        DataSource = DDB5
+      }
+      ECPC_MOD = {
+        DataSource = DDB5
+      }
+      FAST_TRIP = {
+        DataSource = DDB5
+      }
+      CRIO_RV1 = {
+        DataSource = DDB5
+      }
+      CRIO_RV2 = {
+        DataSource = DDB5
+      }
+      CRIO_RV3 = {
+        DataSource = DDB5
+      }
+      PLC_ITL = {
+        DataSource = DDB5
+      }
+      PLC_STANDBY = {
+        DataSource = DDB5
+      }
+      PLC_READY = {
+        DataSource = DDB5
+      }
+      PLC_ON = {
+        DataSource = DDB5
+      }
+      PLC_PERMIT = {
+        DataSource = DDB5
+      }
+      PLC_OP_SELECTED = {
+        DataSource = DDB5
+      }
+      PLC_CC_OP_SELECTED = {
+        DataSource = DDB5
+      }
+      PLC_SYNCMODE = {
+        DataSource = DDB5
+      }
+      TRIGGER = {
+        DataSource = DDB5
+      }
+      BEAM_ON_STAT = {
+        DataSource = DDB5
+      }
+      HVARMED = {
+        DataSource = DDB5
+      }
+      HVINJECTION = {
+        DataSource = DDB5
+      }
+      RFON = {
+        DataSource = DDB5
+      }
+      BEAM_ON_TIME = {
+        DataSource = DDB5
+      }
+      RFON_TIME = {
+        DataSource = DDB5
+      }
+    }
     OutputSignals = {
       DI_Time = {
         DataSource = DANDIODataSource

EC-GN-JA-PCF-IN/src/main/resources/qst-gyrotron-fast-controller/Configurations/src/timers.marte

@@ -62,11 +62,14 @@
   }
   +DDB3 = {
     Signals = {
+      Counter = {
+        Type = uint32
+      }
       Time = {
         Type = uint32
       }
-      Counter = {
+      AbsoluteTime = {
-        Type = uint32
+        Type = uint64
       }
     }
   }
@@ -107,13 +110,16 @@
   +FastTimerGAM = {
     Class = IOGAM
     InputSignals = {
-      Time = {
-        DataSource = FastTimer
-      }
       Counter = {
         DataSource = FastTimer
         Frequency = @fast_clock
       }
+      Time = {
+        DataSource = FastTimer
+      }
+      AbsoluteTime = {
+        DataSource = FastTimer
+      }
       PCF_FAULT = {
         DataSource = Th1Bridge
       }         
@@ -122,10 +128,13 @@
       }         
     }
     OutputSignals = {
+      Counter = {
+        DataSource = DDB3
+      }
       Time = {
         DataSource = DDB3
       }
-      Counter = {
+      AbsoluteTime = {
         DataSource = DDB3
       }
       PCF_FLT = {